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rs251238597 SNP Detail
Summary
  • ID
    rs251238597
  • Variation Type
    SNP
  • Alleles
    A/G
Genome Location and Flanking Sequence
  • Location
    Chr3:131194815 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                TGCTTGCTTC TAGGAAAGGA
    GAGGAGAGGA GAGGAGAGGA GAGGAGAGGA GAGGAGAGGA GAGGAGAGGA GAGGAGAGGA
    GAGGAGAGGA GAGGAAGAAA TGGTAAAGAG TTCGCTACAA ATACCTTCTG CAGAGTCCAG
    GCCTCTCATT CTCTGTGTGT CCAGCTGCTT TGATGTCTCT TAAACATTTA GTAGCTCCCA
    R
    GACAGAGGGT GGGGACAAAA CCTTCTTAGG TATCCACCTG CAACGTTTAA CTTCCTGGAA
    ACCTCCCTTC CCACTCTAAG GGAGTAGACA ACAATATTTC ACGTGCTAAC CTGGGCCCGC
    CAGATCTGTC AGAAGGAAGC TGGCATTTAC CTAAGCCAAC TGGAACTTGC TATTATTTAC
    AGGTCAAGAG TTAAAATTTA                                            
    
    R = A/G
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
ss359739276 MGP_WTSI_3_131152018 EVA_MGPV3 EVA_MGPV3 f SNP G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A A G G G G G G G G G G A G G G A
SNP Consensus Information
SNP Consensus Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs251238597 SNP G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A A G G G G G G G G G G A G G G A
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation
Type
Alleles
ss359739276 MGP_WTSI_3_131152018 SC_MOUSE_GENOMES SC_MOUSE_GENOMES f SNP A/G
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr3:131194815 () rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
Cpgi13839 CpG island 13839 558 bp proximal
Gm36753 predicted gene, 36753 1262 bp upstream
Rr585350 regulatory region 585350 163 bp distal
Rr585351 regulatory region 585351 838 bp proximal
Rr585352 regulatory region 585352 1351 bp proximal
Rr585353 regulatory region 585353 1611 bp proximal
Sgms2 sphingomyelin synthase 2 Intron
Noncoding-Transcript-Variant
Tssr1055 transcription start site region 1055 658 bp upstream
Tssr1056 transcription start site region 1056 951 bp upstream
Tssr31735 transcription start site region 31735 683 bp upstream
Tssr31736 transcription start site region 31736 1297 bp upstream
Tssr35707 transcription start site region 35707 33 bp upstream
Tssr35708 transcription start site region 35708 4 bp upstream
Tssr35709 transcription start site region 35709 693 bp downstream
Tssr35710 transcription start site region 35710 709 bp downstream
Tssr35711 transcription start site region 35711 857 bp downstream
Tssr35712 transcription start site region 35712 883 bp downstream
Tssr35713 transcription start site region 35713 1124 bp downstream
Tssr35714 transcription start site region 35714 1398 bp downstream
Tssr35715 transcription start site region 35715 1456 bp downstream
Tssr35716 transcription start site region 35716 1599 bp downstream
Tssr35717 transcription start site region 35717 1675 bp downstream
Tssr35718 transcription start site region 35718 1693 bp downstream
Tssr35719 transcription start site region 35719 1936 bp downstream
Tssr35720 transcription start site region 35720 1999 bp downstream

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
03/18/2025
MGI 6.24
The Jackson Laboratory