rs251233945 SNP Detail

Summary

• ID
  rs251233945
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:117272367 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GACTGCAGAG AAGGTTGGCA
  GAAGTCGGGG GAGACAGCCG ACTACAGAGC TAGGGAGATC CCAAGCACAA AGTCAGCCCT
  GGCAAAGCCT CTGATTGGGT GGAGTGAGGA GGAGGGGAAT GAGAGGGGAG CTCCTTCTAT
  CCAGGCTTAA AAAGTCAAAA GCTCACACCA GGAAGAAACT GTCCAGCTTG CCCCCAAGTG
  R
  CCTCCACTTC CCACAGCCGG TCTCAGCTCA CAGCCAACAA GCCGACTGCC ATCTTGAATT
  GCACTCTTCA GTCTGGTCCT GCCAAAGATG ATGGGGCCCT GCTCTTCTAC CCCAGCCTTT
  CTGCCAGCCT GGGTGTCCCA CAGCTGACCG CTTGCAAGCA GGCCTCTATC CCCAGAAGCC
  ATTCCCTCCC CCTCAACGTT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321279376	CHEV_4_117087775	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs251233945					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:117272367 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rnf220	ring finger protein 220			Intron
				Noncoding-Transcript-Variant
Rr377057	regulatory region 377057			1539 bp downstream
Rr377058	regulatory region 377058			within coordinates
Rr598144	regulatory region 598144			within coordinates
Rr598145	regulatory region 598145			712 bp proximal
Rr598146	regulatory region 598146			1743 bp proximal