rs251207033 SNP Detail

Summary

• ID
  rs251207033
• Variation Type
  SNP
• Alleles
  A/C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:90757210 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCATGTGGCC CTTAGTGCAA
  ACCTGAGTTC GACATAGCCA AGGTCCTTAG TGGGCTCTCC AGTGATTACA GCACAACATC
  CAGCCTTGAT GACGTCATGT GGCTTTTCTC ATGTCCTGAA GACCCTCAGT TCTTTCAAAG
  TCCTTAGGTT TGACCTGTGT TTTGCTAGCA AAGCCCTTCA GACATGCCCC CCCCCCCCCC
  V
  CTGTAAGAGT TCACTTCTGG AAGGTCCACT CAGACACAGA CACTCTGTTC TGCCAAGGCT
  CTGATCACAT GCCTTCTACA GCTGACAGAA TCTGCTCCTC TTCTTCTCAT GGTCTGAAGC
  TATAGATAAC TGAAAAAGTC TGTCTCAGAA CAGAGAGACC TGAGTTTTAA TCCCCAGGCC
  ACACGGACAC AGCTCTGTGT                                            
  
  V = A/C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	CE/J	CZECHII/EiJ	LG/J	PL/J	SEA/GnJ	SPRET/EiJ	ST/bJ
ss369170710	MGP_WTSI_6_90730222	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	A	A	C	C	A	G	C
SNP Consensus Information
SNP					Consensus Type	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	CE/J	CZECHII/EiJ	LG/J	PL/J	SEA/GnJ	SPRET/EiJ	ST/bJ
rs251207033					SNP	C	C	C	C	C	C	C	A	A	C	C	A	G	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss369170710	MGP_WTSI_6_90730222	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:90757210 () rs orientation: forward

Symbol	Name	Function Class
E130314K07Rik	RIKEN cDNA E130314K07 gene	within coordinates
Iqsec1	IQ motif and Sec7 domain 1	Intron
Rr1762	regulatory region 1762	267 bp upstream
Rr634323	regulatory region 634323	993 bp distal
Tssr62048	transcription start site region 62048	1054 bp downstream
Tssr62049	transcription start site region 62049	1796 bp downstream
Tssr62050	transcription start site region 62050	1809 bp downstream