rs251193415 SNP Detail

Summary

• ID
  rs251193415
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr11:4045181 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACACTCGGTT TGTGCCTCCA
  GAAGAGCCCC GTGGACAGAT CTGAACCAAC AGGGTTGTGT GACCTTGGAC AAGTCCCTAG
  CCTTCTCCTG AGCCCTGTCT CCAGGCCAAG CCGAATAAGA ACTAAGCCCC TTTTCAGACT
  CCAGATCGGC AACCCGGTCC ATTGCTTCCC CCCCCCCCCC GCCCCCAGCC CCTCCGGAGT
  R
  GTGGGGTCGC TGCGTCTGTC ACTCCCACGC TCACCCAGGT AGCGCACCCA CGTGTCCCGG
  TAGAGGTCGC GCTCGGCGCC CTGCCGCTGC TGCTCCGACA TGACTTCCCC GGCAAGGTTG
  GAGTCGCTGC AGATTAGAGT CTCACCACAA CTGTGTCTCC ACTAGCACTT GGCTAACACC
  AGGCAAGAAC CCGCCAGTAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
ss382253139	MGP_WTSI_11_3995184	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
rs251193415					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss382253139	MGP_WTSI_11_3995184	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:4045181 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2503	CpG island 2503	within coordinates
Cpgi2504	CpG island 2504	1247 bp proximal
Gm51935	predicted gene, 51935	439 bp downstream
Gm72847	predicted gene, 72847	within coordinates
Mtfp1	mitochondrial fission process 1	Intron
Rr369115	regulatory region 369115	909 bp upstream
Rr441722	regulatory region 441722	1496 bp distal
Rr441723	regulatory region 441723	612 bp distal
Rr441724	regulatory region 441724	within coordinates
Rr441725	regulatory region 441725	53 bp proximal
Rr441726	regulatory region 441726	254 bp proximal
Rr441727	regulatory region 441727	1755 bp proximal
Sec14l2	SEC14-like lipid binding 2	1858 bp downstream
Tssr100092	transcription start site region 100092	1672 bp upstream
Tssr106530	transcription start site region 106530	132 bp downstream
Tssr106531	transcription start site region 106531	152 bp downstream
Tssr106532	transcription start site region 106532	163 bp downstream