rs251177887 SNP Detail

Summary

• ID
  rs251177887
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:43981502 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GGGAT CTGATGACCT TCTGCTTCCG
  R
  TAAATGTCCC AGGAAGTGGG GTCTG                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321099688	CHEV_4_43994374	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs251177887					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:43981502 () rs orientation: forward

Symbol	Name	Function Class
Ccin	calicin	1981 bp upstream
Cpgi14203	CpG island 14203	944 bp proximal
Rr398234	regulatory region 398234	991 bp upstream
Rr591125	regulatory region 591125	1260 bp distal
Rr591126	regulatory region 591126	570 bp proximal
Rr591127	regulatory region 591127	1067 bp proximal
Tssr37010	transcription start site region 37010	1971 bp upstream
Tssr37011	transcription start site region 37011	1994 bp upstream