rs251120009 SNP Detail

Summary

• ID
  rs251120009
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:141232810 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTGTGTCTGA AGACAGCTAC
  AGTGTACTTA CATAAAATAA TAAATAAATA TTTAAAAAAA AAAAAAAAGG AAAAATTGGG
  CTGGAGAGAT GGCTCAGTGG TTAAGAACAC TGACTGCTCT TCCAGAGGTC CTGAGTTCAA
  GTCCCAGCAC CCACAACCAT CTGTAATAGG ATCTGATGCC CTCTTCTGGA GTGTCTGAAG
  A
  CAGATACAAT ATACTTGTAT ATATTAAATA AAAATAATAT TTTAAAAAAG AGAGAGAGAA
  GTTAAAGCCA GTGAGAGGGC TCAGAGGTAA AGAGCCTAGA CTGCTTTTCA ATAGGACCCG
  GGTTCAAGAC CCATCATGGC AGCTCTCAAG TGTAACTCCA AGATCTGACA CCCTCACACA
  CAGACATGCA TGCAAGCAAA                                            
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321387728	CHEV_4_141061414	CHEVERUD	SCREENING_POP	f	SNP	A	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs251120009					SNP	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:141232810 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr603780	regulatory region 603780			702 bp distal
Rr603781	regulatory region 603781			433 bp proximal
Rr603782	regulatory region 603782			1611 bp proximal
Rr603783	regulatory region 603783			1884 bp proximal
Spen	spen family transcription repressor			Intron
				Noncoding-Transcript-Variant