rs251109872 SNP Detail

Summary

• ID
  rs251109872
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr15:12320858 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACTGGGACTT ACTGTCCCCG
  TAGGAGTTGA GACAACGTAT TTGGGCGCGG GGAATATTCT GTCTAAACCT GGCTTACTCA
  CTGCGTATGG TTACTGTTTA TTTTAAATAA TACTGGACAG ACCTACGATA CCGTTTTTGG
  ATAATGTTTT CTCATAAGAC CCGCCCTTCT ACTTCTCCAA ACCCTTCTCA GGTTTGGCAG
  Y
  TTTTCCTTTA ACTTGATTTG CACAAACTGC CAAAGGGATT GAACCTAGTA ATTACATCGA
  AAATAGATTT AGGGCTACAA AGACGTGGCA TGAAACTCAA GAGGTTTACT GTCGCTATAA
  AAGAATCCTA AGGTCGGCTG TCCTAACAGT ACAGTGCGCC CTGACCACTT TACAGCCGCA
  GTCGGAGGTA GGAAAGTTTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss393052768	MGP_WTSI_15_12250527	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs251109872					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss393052768	MGP_WTSI_15_12250527	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:12320858 () rs orientation: forward

Symbol	Name	Function Class
1810049J17Rik	RIKEN cDNA 1810049J17 gene	666 bp downstream
Gm52210	predicted gene, 52210	790 bp upstream
Gm56692	predicted gene, 56692	within coordinates
Golph3	golgi phosphoprotein 3	mRNA-UTR
Rr499509	regulatory region 499509	within coordinates
Rr499510	regulatory region 499510	651 bp proximal
Rr499511	regulatory region 499511	1117 bp proximal
Tssr130734	transcription start site region 130734	653 bp upstream
Tssr130735	transcription start site region 130735	700 bp upstream
Tssr130736	transcription start site region 130736	737 bp upstream
Tssr130737	transcription start site region 130737	762 bp upstream
Tssr130738	transcription start site region 130738	844 bp upstream
Tssr133769	transcription start site region 133769	541 bp downstream