rs251101884 SNP Detail

Summary

• ID
  rs251101884
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:59783763 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    GCGAAACCC AACGGGAAGT GAGAAACCCT
  CGCACACTAT GCCGCGCGAG GCCGCTGCCC CGTGGCCAGC GTTCGGGCCA CCCTTCTCTT
  GGCGTCACCA GTCCTTTTTA CTTACCCGGA ATGCGAGGAG CCTGGAGAAA GCTCGCTGTC
  Y
  GGTCGCAGCC GTGCAGGGGG GCGCGCCCAC GCAGAACCCG GCGAGAGTGC AGCAATGCAC
  CGCGCTACAA CCTTCCCGCC GGCACCAACT TCCGCCTCCT GACTGACGGG CCCCCTGGAA
  GCGGAAGTCC CGCCTATCGA CTGGACGCAA                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321141380	CHEV_4_59796635	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs251101884					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:59783763 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi14350	CpG island 14350			within coordinates
Inip	INTS3 and NABP interacting protein			Intron
				mRNA-UTR
				Noncoding-Transcript-Variant
Rr376572	regulatory region 376572			1222 bp upstream
Rr398295	regulatory region 398295			19 bp upstream
Rr593135	regulatory region 593135			within coordinates
Rr593136	regulatory region 593136			35 bp proximal
Rr593137	regulatory region 593137			252 bp proximal
Tssr41950	transcription start site region 41950			37 bp downstream