rs251080604 SNP Detail

Summary

• ID
  rs251080604
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:120016481 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGCTCATCTC CAGTTTCCAA
  ACAAGTACTT TGGCTGCAAA GATGGGCTGC CTACTAAATA AAACCCAGGA TCAGAGCGAA
  CCTCTTTGCT TTGCCGGAAA CTTAACGGGA ACGGGAGGTG TAGGGGGCGG GGAGAGGCGG
  GTGACAAGCA TGGGAGGAGG TCGAGTTCGA AGATATTCTA CATCTTTAAT CTTTGATTAC
  R
  AACTTGAGAG GACATAGTTG ACTTTTGCCT CTATATTTGA GTAAAAATTA TTTTCCTTTT
  GTTTTCTTAT ACCCTGCCTC GGTGGCTCAG TAAAACATCC CCTTTCTGTA CTACACTTGC
  ATATGTACAC ATATGTAATT TATACCAAGG CGCGGATCTC CGGAAACCTA GATCCGTGCA
  GTTTACAGTA ATGGAATTCT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss369858088	MGP_WTSI_6_119989538	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs251080604					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss369858088	MGP_WTSI_6_119989538	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:120016481 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17916	CpG island 17916	539 bp distal
Cpgi17917	CpG island 17917	242 bp proximal
Gm66353	predicted gene, 66353	within coordinates
Rr399863	regulatory region 399863	540 bp downstream
Rr399864	regulatory region 399864	84 bp upstream
Rr637759	regulatory region 637759	1371 bp distal
Rr637760	regulatory region 637760	688 bp distal
Rr637761	regulatory region 637761	within coordinates
Rr637762	regulatory region 637762	265 bp proximal
Tssr58518	transcription start site region 58518	381 bp upstream
Tssr62751	transcription start site region 62751	1640 bp upstream
Tssr62752	transcription start site region 62752	1606 bp upstream
Tssr62753	transcription start site region 62753	1544 bp upstream
Tssr62754	transcription start site region 62754	1470 bp upstream
Tssr62755	transcription start site region 62755	1381 bp upstream
Tssr62756	transcription start site region 62756	1157 bp upstream
Tssr62757	transcription start site region 62757	965 bp upstream
Tssr62758	transcription start site region 62758	884 bp upstream
Tssr62759	transcription start site region 62759	821 bp upstream
Wnk1	WNK lysine deficient protein kinase 1	848 bp upstream