rs251029886 SNP Detail

Summary

• ID
  rs251029886
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:69551565 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGACAATTTA CAAGAGCTGC
  TTCCAGGCAG CCCAGCAAAC GGTCTCTTCT CTCCAGCAAA CTGTTCGGCT CATCTAACAA
  GAGAGAGGGT TCCTGAGAGC TTCAAAGCTT TCTTGTTTAT TTATGCCCAT CCCCAGGCAG
  GGCTTCTCTG TGTAGCCCTG GCTGTCCAGA AACTCAACTC TGTAGACCAG ACTGCCCTCA
  M
  CTTCATAGAG ATCTGCCTGC CTCTGCTGGG ATTAGAAGTG TGCACAACCA TTTCCTAGCA
  ATGTTTGCAA TTTTTAAAAG ATATATCTGT TCATTTCTCT GTATATGTCT ATGTCCATGC
  ATGTGAGCTT GAACATGTGT ATTCAAATGC ATGTGCATTG CCGTCAGAGA GGACACTGTG
  TGGCCTTGTC TATTGTTCTC                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss354377058	MGP_WTSI_2_69559278	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	C	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs251029886					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	C	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss354377058	MGP_WTSI_2_69559278	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:69551565 () rs orientation: forward

Symbol	Name	Function Class
Cpgi11715	CpG island 11715	1372 bp proximal
Ppig	peptidyl-prolyl isomerase G (cyclophilin G)	1587 bp upstream
Rr397018	regulatory region 397018	1386 bp upstream
Rr558457	regulatory region 558457	1094 bp proximal
Rr558458	regulatory region 558458	1552 bp proximal
Rr558459	regulatory region 558459	1883 bp proximal
Tssr18132	transcription start site region 18132	1576 bp upstream
Tssr18133	transcription start site region 18133	1639 bp upstream
Tssr18134	transcription start site region 18134	1818 bp upstream
Tssr18135	transcription start site region 18135	1850 bp upstream
Tssr24445	transcription start site region 24445	1526 bp downstream