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rs251027893 SNP Detail
Summary
  • ID
    rs251027893
  • Variation Type
    SNP
  • Alleles
    C/T
Genome Location and Flanking Sequence
  • Location
    Chr6:117151552 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                TGGAGCCAGA CCATCCTGGA
TAATGTGAGA ACATGCCTAG ATTTACCCAC AAAACACAAG TCTGAGAATT AATCATAAAC
GGAAGTTTAA ATGAGGATTT GGACTTTGGT AATTGTCCCT GAGTCCTATA TATTTCAACA
GTGGCTCTAT GGGCTCTGAT CGAATATCAG TGATGAAAAT AATAATAATA ATAATAATAA
Y
GAATAAGCCA GAATCTTGCC ATGAAGCCAC AGTGGGGATT CTGGGTTCCA ATCAGAAATG
GAGACAAGAT AAAACTTGCA TACATTCTTA TGATCACAGA CGGCCCTGGT GGTTTTTGGT
AACTATTTAC AAGGCATTTT TTTACATATA TTTTTGTGCA CTTTTTATGT TTCTTTGGAA
GACAAATGTA TTTCAGAATA                                            

Y = C/T

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation Type
129P2/OlaHsd
129S1/SvImJ
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
ss369791596 MGP_WTSI_6_117124609 EVA_MGPV3 EVA_MGPV3 f SNP C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
SNP Consensus Information
SNP Consensus Type
129P2/OlaHsd
129S1/SvImJ
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs251027893 SNP C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation
Type		 Alleles
ss369791596 MGP_WTSI_6_117124609 SC_MOUSE_GENOMES SC_MOUSE_GENOMES f SNP C/T
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr6:117151552 () rs orientation: forward
Symbol Name Transcript Protein Function
Class		 Allele Residue Codon
Position		 AA
Position
Cxcl12 C-X-C motif chemokine ligand 12 Intron
mRNA-UTR
Rr637288 regulatory region 637288 1923 bp distal
Rr637289 regulatory region 637289 267 bp distal
Rr637290 regulatory region 637290 519 bp distal
Rr637291 regulatory region 637291 468 bp distal
Rr637292 regulatory region 637292 1752 bp proximal
Tssr58395 transcription start site region 58395 1086 bp downstream
Tssr58396 transcription start site region 58396 1072 bp downstream
Tssr58397 transcription start site region 58397 1037 bp downstream
Tssr58398 transcription start site region 58398 1014 bp downstream
Tssr58399 transcription start site region 58399 985 bp downstream
Tssr58400 transcription start site region 58400 952 bp downstream
Tssr58401 transcription start site region 58401 918 bp downstream
Tssr58402 transcription start site region 58402 889 bp downstream
Tssr58403 transcription start site region 58403 871 bp downstream
Tssr58404 transcription start site region 58404 860 bp downstream
Tssr58405 transcription start site region 58405 804 bp downstream
Tssr58406 transcription start site region 58406 775 bp downstream
Tssr58407 transcription start site region 58407 753 bp downstream
Tssr58408 transcription start site region 58408 690 bp downstream
Tssr58409 transcription start site region 58409 662 bp downstream
Tssr58410 transcription start site region 58410 644 bp downstream
Tssr58411 transcription start site region 58411 613 bp downstream
Tssr58412 transcription start site region 58412 601 bp downstream
Tssr58413 transcription start site region 58413 577 bp downstream
Tssr58414 transcription start site region 58414 555 bp downstream
Tssr58415 transcription start site region 58415 537 bp downstream
Tssr58416 transcription start site region 58416 519 bp downstream
Tssr58417 transcription start site region 58417 465 bp downstream
Tssr58418 transcription start site region 58418 439 bp downstream
Tssr58419 transcription start site region 58419 419 bp downstream
Tssr58420 transcription start site region 58420 384 bp downstream
Tssr58421 transcription start site region 58421 360 bp downstream
Tssr58422 transcription start site region 58422 347 bp downstream
Tssr58423 transcription start site region 58423 326 bp downstream
Tssr58424 transcription start site region 58424 267 bp downstream
Tssr58425 transcription start site region 58425 228 bp downstream
Tssr58426 transcription start site region 58426 210 bp downstream
Tssr58427 transcription start site region 58427 176 bp downstream
Tssr58428 transcription start site region 58428 165 bp downstream
Tssr58429 transcription start site region 58429 87 bp downstream
Tssr58430 transcription start site region 58430 56 bp downstream
Tssr58431 transcription start site region 58431 31 bp upstream
Tssr58432 transcription start site region 58432 104 bp upstream
Tssr58433 transcription start site region 58433 140 bp upstream
Tssr58434 transcription start site region 58434 578 bp upstream
Tssr62617 transcription start site region 62617 1015 bp upstream
Tssr62618 transcription start site region 62618 992 bp upstream
Tssr62619 transcription start site region 62619 956 bp upstream
Tssr62620 transcription start site region 62620 923 bp upstream
Tssr62621 transcription start site region 62621 839 bp upstream
Tssr62622 transcription start site region 62622 299 bp upstream
Tssr62623 transcription start site region 62623 279 bp upstream
Tssr62624 transcription start site region 62624 133 bp upstream
Tssr62625 transcription start site region 62625 within coordinates
Tssr62626 transcription start site region 62626 64 bp downstream
Tssr62627 transcription start site region 62627 95 bp downstream
Tssr62628 transcription start site region 62628 230 bp downstream
Tssr62629 transcription start site region 62629 410 bp downstream
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Funding Information
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Send questions and comments to User Support. 		last database update
03/25/2025
MGI 6.24 		The Jackson Laboratory