rs251022012 SNP Detail

Summary

• ID
  rs251022012
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:55018218 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AGCAAGTAGA TCTGTAGACA AGTGACTTAA TTTTATTGCC
  TGAAGAAATG GAGGGATTCT TTGTCTAACA CACACACACA CACACACACA CACACACACT
  R
  GATATGACAT TGTAAAATGA TTTTGAGCAT ATGATTTGAA AGCAGTTAAA GAATAAAGGC
  AGGATGCCAT TATAAAATCC TACCTGATTC ACTTAAACA                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320774362	CHEV_3_54914719	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs251022012					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:55018218 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13184	CpG island 13184	1118 bp proximal
Rr374991	regulatory region 374991	1327 bp downstream
Rr576901	regulatory region 576901	220 bp distal
Rr576902	regulatory region 576902	821 bp proximal
Rr576903	regulatory region 576903	1210 bp proximal
Rr576904	regulatory region 576904	1601 bp proximal
Spart	spartin	1311 bp upstream
Tssr29147	transcription start site region 29147	1283 bp upstream
Tssr29148	transcription start site region 29148	1557 bp upstream
Tssr29149	transcription start site region 29149	1580 bp upstream