rs251020944 SNP Detail

Summary

• ID
  rs251020944
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:84503931 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGCCTGTGAT CATGTTCCTG
  TGTATCCATG GCTGGTGCCC ATCCCTTGTG AGGAGTAGAA CGTTGGGATC AGTGCTTGCC
  ACACAGGCAC GCATGCCTGC TTGCTAACAT TATATACTCA TGCATTAGCT CATTCATTTC
  AACAAACCCA TTTGGAAAGC AAGATGCAAA TGCAGCCTGA GGGTGTAAAG AATATAGGCA
  T
  GAAGAGATCT CTCAAAATTC TTTACATGGT AAAGAATTTA CTAACTGTGA AGGTTTTTAA
  CAAATGGAAA ATTCATTCGT CTCCTTAACC AAATGAAAAA CTAATAAAAC AGTTAAGGAA
  ACTTTTTCTT GGGCAACATT TTGACCTTTT GGCAACTACT TTATAACTAC AGAAATCAAG
  AAAAGCCAAA ATATACTTTG                                            
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss325261405	CHEV_16_84707288	CHEVERUD	SCREENING_POP	f	SNP	T	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs251020944					SNP	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:84503931 () rs orientation: forward

Symbol	Name	Function Class
Gm60965	predicted gene, 60965	within coordinates
Mir155hgit	Mir155 host gene intronic transcript	within coordinates
Rr404939	regulatory region 404939	1612 bp downstream
Rr404940	regulatory region 404940	1463 bp upstream
Tssr139159	transcription start site region 139159	1463 bp downstream
Tssr139160	transcription start site region 139160	1395 bp downstream
Tssr139161	transcription start site region 139161	1158 bp downstream
Tssr139162	transcription start site region 139162	1831 bp upstream