rs250953508 SNP Detail

Summary

• ID
  rs250953508
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:95857903 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTTATTCCAT GCTGTAATGC
  TTCCTCTTTC CCAGTAAAGT TACAACCCCC ACACCTTTAT ACTTTTTCCT TTCACTGCTC
  AGCCCATTAT ATTTTAATTC CTTTACTTTT AAAAAAAAAT AAATTAGTTT ATCTATTTAC
  ATTCCAAATG TTGCCCCTCT TCTTGGTTCC TCCTCCCAGA GTTCTTCACC TCATCGTCCT
  Y
  CCCTTTGTTT TACAGAGGGT GCTCATCCCC ACCCCTTCAC CTTTCCATAC CCCCCTTTGC
  ATCCCCCCCA ACCTTTCCAC CCCCCCCAAT CCCCAGCAAC TCTCACCTCA CCCACTCTCA
  AGAATCCCTC TTCCCTGGGG TATCTACTCT TTACAGTAAG TTTAGCACAG CCTCACCCAC
  TGAGGCCATA TAAGGCAGTC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss362492503	MGP_WTSI_4_95636357	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	T	T	T	T	T	C	T	T	T	T	T	T	T	T	T	T	C	T	C	C	T	T	T	C	C	T	T	C	C	C	T	C	C	C	C	T	C	T	T	C	C	T	T	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs250953508					SNP	C	C	T	T	T	T	T	C	T	T	T	T	T	T	T	T	T	T	C	T	C	C	T	T	T	C	C	T	T	C	C	C	T	C	C	C	C	T	C	T	T	C	C	T	T	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss362492503	MGP_WTSI_4_95636357	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:95857903 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi14458	CpG island 14458			1735 bp distal
Hook1	hook microtubule tethering protein 1			Intron
				Noncoding-Transcript-Variant
Rr595501	regulatory region 595501			1521 bp distal
Tssr37839	transcription start site region 37839			253 bp upstream
Tssr37840	transcription start site region 37840			284 bp upstream