rs250935242 SNP Detail

Summary

• ID
  rs250935242
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:59381239 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    GGATGCTGA ATTGAGCAAT TCAAGCAATC
  CCAGATGGTT CATCATGAAT GAGCCTGGCC CATTGCCTGA CCAGGCAAAA AAAGGAAAAG
  ATTCCTGCCT GCGGGTGGGG AAGGGCTCCA ACTGTGATTA GTCTGATGGG CCACTGGATG
  Y
  CACTGCTGTT CCACTCAGAG GCTGCAGCGA GGCCCAGAAA TGAGCTCCGA CTGGAAGCTT
  CCTTAAGGCA TACAGGAGAG AGCTACTGCT CCTCGCTCCT CTCAGCCTGG GTGGTAGGCA
  TTCACTCAGG TGACTGCAGA ATCCCAAGGG                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321140610	CHEV_4_59394111	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs250935242					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:59381239 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr593055	regulatory region 593055			within coordinates
Rr593056	regulatory region 593056			within coordinates
Rr593057	regulatory region 593057			879 bp proximal
Susd1	sushi domain containing 1			Intron
				Noncoding-Transcript-Variant