rs250905033 SNP Detail

Summary

• ID
  rs250905033
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:148246689 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GAGAG AGATGGCCTC CATTACACAG
  R
  GTGGCTGGGT CCCCTCCCCA CTGGC                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321417747	CHEV_4_147536341	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs250905033					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:148246689 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi15295	CpG island 15295			1188 bp distal
Cpgi15296	CpG island 15296			1732 bp proximal
Fbxo2	F-box protein 2			Intron
				Noncoding-Transcript-Variant
Rr398857	regulatory region 398857			1903 bp downstream
Rr604608	regulatory region 604608			1601 bp distal
Rr604609	regulatory region 604609			471 bp distal
Tssr40264	transcription start site region 40264			1602 bp downstream
Tssr40265	transcription start site region 40265			1580 bp downstream
Tssr40266	transcription start site region 40266			1552 bp downstream
Tssr40267	transcription start site region 40267			1985 bp upstream