rs250896641 SNP Detail

Summary

• ID
  rs250896641
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:127645179 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGGAGAGAGC AGTGGCAGGT
  GACAGGACAA AAGAGCCAGC TAGGTCGGAA GGCTCCACCC TAGGTAATCT CCTTCTTAGT
  GGTAGCAAGG TCAAAGTCTG GATCAGCCTG CTTCAGGGCT GAGGGAGGCT ACAGCCACCC
  AAGCACCTGC AGTTTAGAAA GGCTGTTAGT AACAGCTCTC CCTGTGTTGG AAGCGGAGAG
  Y
  TCCCTGTTGT ATAAAACTTT ACAAGGAAGG TTCTGTTTGT TCTCTGAAAG GATTACTTCA
  TGATACTTCA CCACAGTTTT ACCTTCTATC TTTACAGGAC AACTTGATTA ACCCCCTTCC
  CACAGCTAGA CTGTAAACAA TGCAGAACCA TGCTATTCTT GCTTATTATT CTAACAGTAC
  ATTAGTGCCC CACACTTGCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BTBR T<+> Itpr3/J	BUB/BnJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CE/J	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	KK/HlJ	LEWES/EiJ	LG/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss359648966	MGP_WTSI_3_127554448	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BTBR T<+> Itpr3/J	BUB/BnJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CE/J	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	KK/HlJ	LEWES/EiJ	LG/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs250896641					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss359648966	MGP_WTSI_3_127554448	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:127645179 () rs orientation: forward

Symbol	Name	Function Class
Rr584881	regulatory region 584881	1056 bp distal
Rr584882	regulatory region 584882	1091 bp distal
Rr584883	regulatory region 584883	within coordinates
Rr584884	regulatory region 584884	1237 bp proximal
Rr584885	regulatory region 584885	1874 bp proximal
Rr584886	regulatory region 584886	1982 bp proximal