rs250888412 SNP Detail

Summary

• ID
  rs250888412
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:58791758 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TCTTTAACAA AGATGCCAGA ATGTCTTATA TTATTAGTAA
  TACTTAAGAA TCCTGAGGGT TATACTTTCG TTTTTGAAAA TTCACACACA CACGCACACG
  Y
  ACACATACAC ACACAGAGGG AGACAGAGAG AGAGAGAGAG AGATGCATGC GCATGTGCTC
  AAGTATGTGT GTGAGTGCCA TAGTGTGTAT ATGGATGTC                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320783900	CHEV_3_58688259	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs250888412					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:58791758 () rs orientation: forward

Symbol	Name	Function Class
Clrn1	clarin 1	Intron
Rr375038	regulatory region 375038	419 bp downstream
Rr577289	regulatory region 577289	1010 bp distal
Rr577290	regulatory region 577290	539 bp distal
Tssr33373	transcription start site region 33373	983 bp downstream