rs250881979 SNP Detail

Summary

• ID
  rs250881979
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:10974249 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTAAGAACGC ACATGGTGAA
  AGAAGAGAAT GAACTCTGAT AGGTTGTCAC AATGTGACCT CCATATACGT GCTTATGCAC
  TACACGCACA CATACACACA CGCACGCGCG CGCACACACA TACATAAATA AATAAATAAA
  TAAATAAATA AATAAATAAA TAAATAAATA AATGTGAAGA AAAAATTCAA TGTCAAAGAC
  W
  CACTCTGGCT TCAATCTCCT GGCCCAAGTG GTGCCCCCAC CTTAGTCTCT GAGTGGCCAG
  GGCCACAGAC ATAGATAGGC TCTGTATCCA CAGTTTTTTA TTTACTTTTG TCTTTCTCTT
  GCTATATTTC TGAAGCTACT AATGCTCATT CAACCTTTGC TGGCCTGAAA TTTCATTAGA
  GGCTGCGTTC AGCATCTTGT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss360586771	MGP_WTSI_4_10901396	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	A	A	A	T	T	T	A	A	A	A	A	A	A	A	A	A	T	A	A	T	A	A	T	T	A	A	T	T	T	A	A	T	T	T	A	T	A	A	A	T	A	A	A	A	T	A	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs250881979					SNP	T	T	T	A	A	A	T	T	T	A	A	A	A	A	A	A	A	A	A	T	A	A	T	A	A	T	T	A	A	T	T	T	A	A	T	T	T	A	T	A	A	A	T	A	A	A	A	T	A	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss360586771	MGP_WTSI_4_10901396	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:10974249 () rs orientation: forward

Symbol	Name	Function Class
Gm69307	predicted gene, 69307	within coordinates
Rr588838	regulatory region 588838	508 bp distal
Rr588839	regulatory region 588839	407 bp distal
Rr588840	regulatory region 588840	within coordinates
Rr588841	regulatory region 588841	1155 bp proximal
Rr588842	regulatory region 588842	1913 bp proximal