rs250849501 SNP Detail

Summary

• ID
  rs250849501
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:44074175 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GATCTACTTT TTTAGGTTGT
  TTTTTTTTTT TTTTTTTTGA GACAGGATCT TACACTGTAC CTAGCTGAAA CTGGCACGGG
  ATTGACTGTG TAGCCCAGAC TGGTCTCAAG CCACGTCAGT CCTCCTGCCT CAGCTTCCAT
  TGGGGGTTCT TGCTATAAGC TAAATGTGGA CCCCATCAGA CTTTTACAGC TTGTGGTCTA
  Y
  CTCAGTCAAG GATGAAGCTC TGGTTTGCAT GGTATTAGTG TAGCCATGTT GGATCCTGCA
  AGGGTCATCC CATCATGAAA GGACAGACAA TGAGTGGTTT TGTACACTGA GGTGACATTG
  TCTACCTTTC TGTCTGAGAT CAGCAACCAT CGATTTGTAA GTTGACCAGG TCACCATTCA
  TGAATGCTCT GATAACACGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321100052	CHEV_4_44087047	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs250849501					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:44074175 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14207	CpG island 14207	1108 bp distal
Gne	glucosamine (UDP-N-acetyl)-2-epimerase/N-acetylmannosamine kinase	Intron
Rr591149	regulatory region 591149	1408 bp distal
Rr591150	regulatory region 591150	911 bp distal
Rr591151	regulatory region 591151	1178 bp distal
Rr591152	regulatory region 591152	within coordinates
Tssr41482	transcription start site region 41482	1618 bp upstream
Tssr41483	transcription start site region 41483	1482 bp upstream
Tssr41484	transcription start site region 41484	1444 bp upstream
Tssr41485	transcription start site region 41485	1154 bp upstream