rs250826478 SNP Detail

Summary

• ID
  rs250826478
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:124382103 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AATTTACAAC CCCTAGACTG
  TACCAGGCAA GGTTAGTGGC TATTGAAAAT ACCACCAGGA CAGGGCTATC TAAAGACACA
  TTTGGTAGTG TGTTAACTAT ACAAAAAAAA AAAAAAAAAC ACACTGTACA GTTTAAAAAC
  AAATCTTACA CAGCCTTACA TTTCAATTTT TTTCTTTAAA AGAAGTGAGT TGTGTGTGTG
  K
  GGGGGGGGGG GGTAAATGCT TTATAGACAA GAAAACAAAC TGCGCTAGAA CCAACTTATT
  CATTATCACC ATCTTCTTCA TTTTCATCTT CCTCTTCTTC CTCGTCCTCA TCCTCTTCAT
  CCTCCTCCTC ATCTTCCTCT TCCTTCTTTT TCTTGCTCTT TTCAGCCTTG ACCACCCCCC
  CCTTTTTCAC TGCATCAGGT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BTBR T<+> Itpr3/J	BUB/BnJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	KK/HlJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	NZW/LacJ	PL/J	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
ss359559792	MGP_WTSI_3_124291372	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	T	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T	T	G	G	G	G	G	G	G	G	T	G	G	G	G	G	T
SNP Consensus Information
SNP					Consensus Type	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BTBR T<+> Itpr3/J	BUB/BnJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	KK/HlJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	NZW/LacJ	PL/J	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
rs250826478					SNP	G	G	T	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T	T	G	G	G	G	G	G	G	G	T	G	G	G	G	G	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss359559792	MGP_WTSI_3_124291372	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:124382103 () rs orientation: forward

Symbol	Name	Function Class
Gm9379	predicted gene 9379	74 bp downstream
Rr584594	regulatory region 584594	612 bp distal
Rr584595	regulatory region 584595	706 bp distal