rs250807665 SNP Detail

Summary

• ID
  rs250807665
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:145799836 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACAACTTTTA TGTTGCCCTG
  TCCTATGTTG AGACACTGTT CTTGATGAAA GCATGATGTG ACAAAGCAAG CTGTATTCTT
  TAGAACTAAA TTGGATTCTT CCTTTTTTTT TTCAAATACA CTACAGTAAA ATGTATTTGT
  GACATTTAAA GTAGCAACTT CTTTTAATAG TATATTTTTA AGTCTAACTG GAGAGTGCAG
  M
  CTCTTTAGAT AAAGAAGAAG CTTTGAGGCC AGCAGAAGGG TCTGGGACGT TTCTTGGACA
  TGCAGGCTGC CTTTGTGCTG TTCTCGCCGA GCTGGGGTAA TATTTCCCAC CTGAGGATTT
  GCACAGTGAC CTGGCTAGCA GCCTGTGTTA CACACATCTC TCTGCCTCAA GGGAAGCCAG
  CCTGTGCCTT CCCTCTAGAA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320539037	CHEV_2_145783652	CHEVERUD	SCREENING_POP	f	SNP	C	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs250807665					SNP	C	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:145799836 () rs orientation: forward

Symbol	Name	Function Class
Cfap61	cilia and flagella associated protein 61	Intron
Rr397368	regulatory region 397368	148 bp downstream
Rr566613	regulatory region 566613	877 bp distal
Rr566614	regulatory region 566614	within coordinates
Rr566615	regulatory region 566615	272 bp distal
Rr566616	regulatory region 566616	126 bp proximal