rs250787233 SNP Detail

Summary

• ID
  rs250787233
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:14950739 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CACAT AGATTCTAAT ATATAGGTAA
  Y
  GTGATGTCTA GGTGCCTCCA TAGAA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BTBR T<+> Itpr3/J	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C58/J	CAST/EiJ	CZECHII/EiJ	DBA/1J	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PWK/PhJ	QSi5/Ianm	RF/J	SEA/GnJ	SPRET/EiJ	WSB/EiJ	ZALENDE/EiJ
ss925281669	MGP_WTSI_3_14885679_mm38	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	C	T	T	T	T	T	C	T	T	T	T	C	T	T	T	C	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BTBR T<+> Itpr3/J	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C58/J	CAST/EiJ	CZECHII/EiJ	DBA/1J	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PWK/PhJ	QSi5/Ianm	RF/J	SEA/GnJ	SPRET/EiJ	WSB/EiJ	ZALENDE/EiJ
rs250787233					SNP	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	C	T	T	T	T	T	C	T	T	T	T	C	T	T	T	C	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss925281669	MGP_WTSI_3_14885679_mm38	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:14950739 () rs orientation: forward

Symbol	Name	Function Class
Car2	carbonic anhydrase 2	594 bp upstream
Cpgi12992	CpG island 12992	336 bp proximal
Rr573722	regulatory region 573722	308 bp proximal
Rr573723	regulatory region 573723	460 bp proximal
Rr573724	regulatory region 573724	760 bp proximal
Rr573725	regulatory region 573725	807 bp proximal
Rr573726	regulatory region 573726	1490 bp proximal
Rr573727	regulatory region 573727	1543 bp proximal
Rr573728	regulatory region 573728	1725 bp proximal
Tssr826	transcription start site region 826	525 bp upstream
Tssr827	transcription start site region 827	739 bp upstream
Tssr828	transcription start site region 828	755 bp upstream
Tssr829	transcription start site region 829	845 bp upstream
Tssr830	transcription start site region 830	926 bp upstream
Tssr831	transcription start site region 831	947 bp upstream
Tssr832	transcription start site region 832	1036 bp upstream
Tssr28466	transcription start site region 28466	1004 bp upstream
Tssr28467	transcription start site region 28467	1136 bp upstream
Tssr28468	transcription start site region 28468	1709 bp upstream