rs250782933 SNP Detail

Summary

• ID
  rs250782933
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:52893332 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGCTGGAGC CCCGCCTCCC
  TGTCTCCTCC CTGCTGGAGC CCCGCCTCCC TGTCTCCTCC CTGCTGGAGC CCCGCCTCCC
  TGCCACCTCA CTGCTGAAGC TCCAACCTCC TTGTCTTCTT ACTGCTGTAC TCTCTTACAC
  CAGGCAGCTG CAAGCTGTGC CCTGTCACCA TGCTAGTATG GATCCATGTG TGCTATGTTC
  Y
  AAACTATCCA TTAACTGAAT TTTAACTTCA GATGAGTTTA CCACACTGTA TCCCCACTCT
  AAATTAAGGA GACATGTACA ATATTTAATA GCTTTAAATC TACAGAAAAA CAGATGCAAA
  GTAGACCATA AGACAGTCAT CTACACTGCA AAATATGTAG GACATGGTCA AAATTATCAA
  CACTGCCTTG ACTTGCTTAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320766353	CHEV_3_52789833	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs250782933					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:52893332 () rs orientation: forward

Symbol	Name	Function Class
Cog6	component of oligomeric golgi complex 6	Intron
Gm65168	predicted gene, 65168	within coordinates
Rr397670	regulatory region 397670	77 bp downstream
Rr576615	regulatory region 576615	1600 bp distal
Rr576616	regulatory region 576616	within coordinates