rs250693446 SNP Detail

Summary

• ID
  rs250693446
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:58600696 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTACTCTTAG AGGACCAGAC
  TTTGGTCCCC AGCACCCACA ACTGCCTGTA ACCCCAGCTC CAGGGGATCT GATACCATTT
  GGTACCAGTA CACATTATAT ACACACATGC CCATAAATAA AAATAAACCT TAAGTGTGGT
  GGGGGTGGGA CAGGGGACAT CTACAGCCTA CCTTCCGGTC TAGCAATAAG AGAACTCTCC
  R
  AGGGTTCCCC TAGTCTCAGT AAAACTTATT TCCAGGTACT CTTCACCATT CAGAACCCCA
  GAATTAGAGA GCGCCTGAGA GTTTGGAGTG AACCGTATAA TGGACATACC CTGCACACAA
  TTGCTATGGC AAGCGTTTTA TGCCTGAACT GATGACACTG GAATTGGAAA AAGCTAGTAT
  TGATACTCTT TGTAGGAAAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss358103470	MGP_WTSI_3_58497197	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	A	G	G	G	G	G	A	G	G	G	G	G	G	A	G	G	G	G	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs250693446					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	A	G	G	G	G	G	A	G	G	G	G	G	G	A	G	G	G	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss358103470	MGP_WTSI_3_58497197	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:58600696 () rs orientation: forward

Symbol	Name	Function Class
4930593A02Rik	RIKEN cDNA 4930593A02 gene	within coordinates
Cpgi13206	CpG island 13206	357 bp distal
Rr577267	regulatory region 577267	1927 bp distal
Rr577268	regulatory region 577268	1215 bp distal
Rr577269	regulatory region 577269	982 bp distal
Rr577270	regulatory region 577270	645 bp distal
Rr577271	regulatory region 577271	within coordinates
Siah2	siah E3 ubiquitin protein ligase 2	875 bp upstream
Tssr29217	transcription start site region 29217	739 bp downstream
Tssr29218	transcription start site region 29218	652 bp downstream
Tssr33366	transcription start site region 33366	1260 bp upstream
Tssr33367	transcription start site region 33367	1152 bp upstream
Tssr33368	transcription start site region 33368	863 bp upstream
Tssr33369	transcription start site region 33369	832 bp upstream