rs250686573 SNP Detail

Summary

• ID
  rs250686573
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:116487120 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AATTTTCCTT TGAGATTTGT
  TTGTTTGTTA ATGTTAAATA GGATGAGATA TTTGAGTCAC GAATTTAACA AAAAATTAAG
  GCAGGGCAGT GGTGGCACAT GCCTTTAGTC CTAGTATTTG GGAGACAGGA GGATCATTGA
  GTTCAAGGCC AGCCTAGTCT AAAGAGCAAG TTCCTGGGGG CTGGTGAGAT GGCTCAGTGG
  Y
  TAAGAGCACC CGACTGCTCC TCCGAAGGTC CGGAGTTCAA ATCCCAGCAA CCACATGGTG
  GCTCACAACC ATCCGTAAGG AGATCTGACT CCCTCTTCTG GAGTGTTTGA AGACAGCTAC
  AGTGTACTTA CATATAATTA ATTAATAAAT AAATAAATAA ATAAATAAAT AAAAAAGAGC
  AAGTTCCCAG GACAGCTAGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321277632	CHEV_4_116302528	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs250686573					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:116487120 () rs orientation: forward

Symbol	Name	Function Class
A430091L06Rik	RIKEN cDNA A430091L06 gene	1236 bp downstream
Gm69034	predicted gene, 69034	801 bp upstream
Nasp	nuclear autoantigenic sperm protein (histone-binding)	mRNA-UTR
Rr398405	regulatory region 398405	1759 bp downstream
Rr597938	regulatory region 597938	1492 bp distal
Rr597939	regulatory region 597939	1036 bp distal
Tssr42897	transcription start site region 42897	1967 bp upstream
Tssr42898	transcription start site region 42898	1935 bp upstream