rs250684292 SNP Detail

Summary

• ID
  rs250684292
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:117658585 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGGTCTTAGG AGCTTTGTGT
  CAGTGTGTGG TTACTGGAGG TGGTGGAACC CGAAGAAGGT TAGATTTGCT GAGGGATGCT
  TAGGCTTAAA TGAGTACTCA TGGGATACAG ACTTGGCTCA TTCAAGAGAG TCTTTTATAT
  AAAACCATAC TGAGGCCTCT CCTGGTCCCT CTGGCTTCCT TTTCGGAAAC GTGATAGTTC
  Y
  CTTGTTCCCT GTACTCCACC CAGATGAAGT ACAGGAGGCC TTCTCCCCAG CTGAGCTGAT
  AATCATATCC CTGAGCCACT AGCACCCTGT GATAAGTAAA GTCCTTTTAT TCATAAAGTG
  ATTTAGTCTT AGGTATTCCA TTAGAGTAAT AAAAAGGTTG AGTGTCTCAA TAATGATACT
  GTATTTTCTC TCAAAAATAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320900584	CHEV_3_117567854	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs250684292					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:117658585 () rs orientation: forward

Symbol	Name	Function Class
Gm52614	predicted gene, 52614	1898 bp downstream
Rr583873	regulatory region 583873	718 bp proximal
Rr583874	regulatory region 583874	1962 bp proximal
Snx7	sorting nexin 7	Intron