rs250674585 SNP Detail

Summary

• ID
  rs250674585
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:113599889 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    GGCACTGAA TGTTATCTGA TAGTAGTTGT
  ATGCTAATTC TTTGaaccag tcatggtagc acatatctag aatgccagta cttgggaggc
  agacacagga gtgccactaa tttgaggcca gcctgggcta tatatattca gctgcaaggc
  W
  atgggaacta tgcaataagt ctgcgtctaa aaagaaaaag aCAAAATATT TTAAAATTCT
  ATTCACAAAC ATAAAAAAGT TTGAAAGGAA ACAAAAACTG GTAATACTGT TTTCTGGGAA
  TGCAGATGGA AAAGGAGGGA AAGTTTTACT                                 
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321911142	CHEV_6_113572922	CHEVERUD	SCREENING_POP	f	SNP	A	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs250674585					SNP	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:113599889 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17851	CpG island 17851	743 bp proximal
Rr636555	regulatory region 636555	653 bp proximal
Tssr58233	transcription start site region 58233	1060 bp upstream
Tssr58234	transcription start site region 58234	1120 bp upstream
Tssr58235	transcription start site region 58235	1198 bp upstream
Tssr58236	transcription start site region 58236	1739 bp upstream
Tssr62461	transcription start site region 62461	600 bp downstream
Vhl	von Hippel-Lindau tumor suppressor	1066 bp upstream