rs250656620 SNP Detail

Summary

• ID
  rs250656620
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:139906074 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CTTTGTAGAC CAGGTTGGCC TCAAACTCAG AAATCCGTCT
  GCCTCTGCCT CCCAAGTGCT GGGATTAAAG GCGTGTGCCA CCACCGCCCG GATTATTTTT
  R
  TTTTTTTTAA AGATTTATTT ATTATTATAA ATAAGTACAT TATAGTTGTC TTCTGACACA
  CCAGTAGAAG GCATCAGATC TCATTACGGG TGGTTGTGA                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320528014	CHEV_2_139889890	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs250656620					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:139906074 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr566073	regulatory region 566073			1580 bp proximal
Rr566074	regulatory region 566074			1681 bp proximal
Tasp1	taspase, threonine aspartase 1			Intron
				Noncoding-Transcript-Variant
Tssr26542	transcription start site region 26542			1671 bp downstream