rs250647219 SNP Detail

Summary

• ID
  rs250647219
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:131873204 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTAGATTTGC AGGGTGAGCT
  GAGGAACTCT CCAGGAAACC TTCTCCAAGG GAATCTTTCT TCTCTTCTAA CCTGGCCTTC
  CGTGACCTCA GAAACAGGAC AAAGGGCAGC CATGACTCCT AACAGCAGGG CTCTGGTTTT
  GCTATTGAAG AAGTCTGTGA GATGCTGCTA GAATTCTTCA GTTCTAGCCC AGCCTCTCAG
  R
  AGAGCCGCTC CCTGGCTCCC CTGGCTCGCG TTGAGTCAAA TGGTCATCTT ATAACCAATC
  ATCTGGCTTC CTGCCAATGA GGGTACACTC CTAATGCCCG AAATACTGGT CCTTGACCCT
  GTTAAATCCA AACCGGGCAA GGCCTGATGA CGTGCACACA TAATTGCTCA GGAGGCTGAG
  ACAAGAAGAG TGTGAATTTG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss355696566	MGP_WTSI_2_131857020	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs250647219					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss355696566	MGP_WTSI_2_131857020	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:131873204 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12299	CpG island 12299	762 bp distal
Gm31179	predicted gene, 31179	within coordinates
Gm75461	predicted gene, 75461	89 bp downstream
Rassf2	Ras association (RalGDS/AF-6) domain family member 2	868 bp upstream
Rr367316	regulatory region 367316	1808 bp downstream
Rr397324	regulatory region 397324	1079 bp downstream
Rr565380	regulatory region 565380	592 bp distal
Rr565381	regulatory region 565381	1219 bp distal
Tssr20294	transcription start site region 20294	1298 bp downstream
Tssr26438	transcription start site region 26438	1480 bp upstream
Tssr26439	transcription start site region 26439	1471 bp upstream
Tssr26440	transcription start site region 26440	1462 bp upstream
Tssr26441	transcription start site region 26441	1440 bp upstream
Tssr26442	transcription start site region 26442	1383 bp upstream