rs250644007 SNP Detail

Summary

• ID
  rs250644007
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:132568262 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTTTCAATC CCTGTCCCGT
  CAACACTGAG GCTCTCCTAC AGTTAGAGTT AGTTCATATT CAAACAGAAA CGTCATGAAT
  TCACTGTCAG AGCTTGCTCC TTCCTTCCTC CCGCACCCCC CCCCCTTTGA TTTTTTTGAG
  ACAGGGTTTC TCTGTAGCCC TGGCTGTCCT TGAACTCACT CTGCAGACCA GGCTGGCCTG
  R
  AACTCAGAAA TCTGCCTGCC TCTGCCTCCC AAGTGCTGGG ATTAAAGGCG TACGCCACCA
  CTGCCTGGCT AGAGCTTCTT TCAGTGTTTA ACACTTTCTT CCCAAGTGAT TCAATTATTC
  AGAGATTTCA GTGGGTCTGT CTTTAGAGCA CCCCCCACCC AAACTCCTGC ATTTTAATAC
  TGGCTATGCC CTTCAGAAAT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321336768	CHEV_4_132396866	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs250644007					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:132568262 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi14975	CpG island 14975			1428 bp proximal
Ppp1r8	protein phosphatase 1, regulatory subunit 8			Intron
				Noncoding-Transcript-Variant
Rr601096	regulatory region 601096			1136 bp proximal
Tssr43718	transcription start site region 43718			1992 bp downstream