rs250595989 SNP Detail

Summary

• ID
  rs250595989
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:55019399 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AAGGT CCCAGGTTCC AGGCAACCAT
  Y
  TGTTCTCCCA ATCCTCAGTG CCCGA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320774365	CHEV_3_54915900	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs250595989					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:55019399 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13184	CpG island 13184	within coordinates
Rr576901	regulatory region 576901	1401 bp distal
Rr576902	regulatory region 576902	within coordinates
Rr576903	regulatory region 576903	29 bp proximal
Rr576904	regulatory region 576904	420 bp proximal
Spart	spartin	130 bp upstream
Tssr29147	transcription start site region 29147	102 bp upstream
Tssr29148	transcription start site region 29148	376 bp upstream
Tssr29149	transcription start site region 29149	399 bp upstream