rs250579684 SNP Detail

Summary

• ID
  rs250579684
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:164248597 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCAGTACTGT AAGAGGATGA
  AAGGGGGAGA CTGGTCAGAA GAGGGGGACG TTAGAGAAGA TGACAGGAGA AGCAGTGTCC
  AGGTCATGTG AGGATTTGGG ATTTTAAACC ACAAGGGATG TTGATAAGAG GACATCACAA
  TTTGATTCAT TTTCATTATT ATTAATAATA TCGTTTATTT TGTTATATTT TGGGGGGGAT
  R
  AGACAGACTC TAACTCTAGC TCAGGCGGAA CCTATACCAA TCCTCCTGCC TCAGAGGCCC
  CATCCCTTCC GTACTGGGTT TAGGATTACA AACGTGAGCC ACCACACCCA ACTTAATTTA
  ACTGTTACTT CTTTCCAGAT TATTTATGTA TTTTATATAT GTGTGTGTAT TTTGTCTACA
  TGCATGCCTG TACACTAGAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320605783	CHEV_2_164232177	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs250579684					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:164248597 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi12657	CpG island 12657			1679 bp distal
Cpgi12658	CpG island 12658			1165 bp proximal
Matn4	matrilin 4			1517 bp upstream
Rbpjl	recombination signal binding protein for immunoglobulin kappa J region-like			Intron
				Noncoding-Transcript-Variant
Rr569599	regulatory region 569599			1573 bp distal
Rr569600	regulatory region 569600			1284 bp distal
Rr569601	regulatory region 569601			999 bp proximal
Rr569602	regulatory region 569602			1221 bp proximal
Tssr21580	transcription start site region 21580			1380 bp downstream
Tssr27452	transcription start site region 27452			1853 bp upstream
Tssr27453	transcription start site region 27453			1820 bp upstream