rs250559095 SNP Detail

Summary

• ID
  rs250559095
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:45331678 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCAGCGGGCT CTCCCAGCAG
  CGGAGAGTTC GTTCCCGCCG CCTTATAACT TCCCGGGAAC TGGGCGTGTG GATACCCGTG
  GCTAGTCAGG CGCGCGGCTC AGAATCCCCG GACTGCTCCC CAGGGATTCG CACCGAACTC
  AGCTTGTGGC CAGCCAGCGA GGACGAGGGC CAGCACCAGG AATGTGCAAA CGTGCCGGTG
  R
  ATTCCCGCAG CGGTGCACAC TCTATCCCCC GTGTGCGTGT GCACCGCCCC GCCCGCCCTC
  GCGGCCACCC CACGGTCATT CTCCAGAGAG CTGTCTTCGG GCTGGGCATG TACCTTCTTC
  CCACACCCCC TCTAGTTATG GAGGCAGGGA TGGATCACCA AGGGTAAAAG AAAAATAAAT
  AATTAAAACA GAAATCAGGC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss357774824	MGP_WTSI_3_45181165	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs250559095					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss357774824	MGP_WTSI_3_45181165	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:45331678 () rs orientation: forward

Symbol	Name	Function Class
2610316D01Rik	RIKEN cDNA 2610316D01 gene	within coordinates
Cpgi13121	CpG island 13121	945 bp distal
Cpgi13122	CpG island 13122	within coordinates
Cpgi13123	CpG island 13123	672 bp proximal
Pcdh10	protocadherin 10	1155 bp upstream
Rr576050	regulatory region 576050	1472 bp distal
Rr576051	regulatory region 576051	1278 bp distal
Rr576052	regulatory region 576052	966 bp proximal
Rr576053	regulatory region 576053	1110 bp proximal
Rr576054	regulatory region 576054	1195 bp proximal
Rr576055	regulatory region 576055	1572 bp proximal
Tssr29009	transcription start site region 29009	1153 bp upstream
Tssr33087	transcription start site region 33087	1227 bp upstream
Tssr33088	transcription start site region 33088	963 bp downstream
Tssr33089	transcription start site region 33089	1006 bp downstream