rs250556646 SNP Detail

Summary

• ID
  rs250556646
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr8:71849057 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTGTCTGTGG TGGTCCTACT
  TGTCTCCGAG ATCGAACTCA GGCCCCTCAG GATTGGTGGC AAGAGCCTGC ACCTGCTCAG
  TAGCCCACAA CGTTTCTCTT CAATGAGTCT GAACTGCTGC ATCAGGCGGT TGGAGGCACT
  GGCAACAATA AGCTTGTCCA CAGTGTGTCT GCTGCCTTCT TTACTTTTTC TTTACATTTT
  R
  GTTTTTATAC AGCGTCTCAT TTAGCCCAGC CTGGTCTAAA CGCCCGATCT TCGTCTCCGG
  GTCTCTGGAG TGTTGGGATG ACAGGTGTGC ACCACCAGTC CTCATCAAGG TACTAGTGAA
  TGAATGCCAA CCTAAGTTAC ATAAGTAACT GAGAAGGCCT TTGGCAAGTC CAAGCCAAGT
  CCTACCCCGT CAATCATCAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss375114057	MGP_WTSI_8_73920312	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs250556646					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss375114057	MGP_WTSI_8_73920312	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:71849057 () rs orientation: forward

Symbol	Name	Function Class
2310041K03Rik	RIKEN cDNA 2310041K03 gene	within coordinates
Babam1	BRISC and BRCA1 A complex member 1	mRNA-UTR
Rr400925	regulatory region 400925	214 bp upstream
Rr665043	regulatory region 665043	639 bp distal
Rr665044	regulatory region 665044	384 bp distal
Rr665045	regulatory region 665045	within coordinates
Tssr77853	transcription start site region 77853	440 bp upstream
Tssr81705	transcription start site region 81705	592 bp upstream
Tssr81706	transcription start site region 81706	573 bp upstream
Ushbp1	USH1 protein network component harmonin binding protein 1	611 bp upstream