rs250554633 SNP Detail

Summary

• ID
  rs250554633
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:141448964 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATAACTTGGG TCATCAAAAC
  ACCCTACACA CACACACACA CACACACACA CACAAAAATT GAAAAAAATT TTTAAAAAAA
  ACTTCAAAAC TGAAAACTGA ACTTGGGCAT GATAGTGTAT TCTTGTAATC CCAGCTGTAC
  AGGAGCCTGA AGCAGGAGGG CTGCTGTCTG AGACTAGCCT TGACCCCACA GTTGAGACCT
  G
  GTCTCAAAAA CAACAACAAC AACAAAAAAC CCAACAACAA CAACAAAAAA AACCAAAGCA
  AACAAACAAA AACCAAAAGC AGCTGGTTGT GATGGCTCAG GCCTTAACTC CAAACATTTG
  GGAGGCAAAG TCAACAGGGA TCTCTGAGTG TAGATGGGAG CCAGTGTTTT ATATAGTGAG
  ACCTGCCTTA AAAACAAAAC                                            
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321389277	CHEV_4_141277568	CHEVERUD	SCREENING_POP	f	SNP	G	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs250554633					SNP	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:141448964 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15241	CpG island 15241	1079 bp proximal
Ddi2	DNA-damage inducible protein 2	Intron
Rr603862	regulatory region 603862	1538 bp distal
Rr603863	regulatory region 603863	248 bp distal
Rr603864	regulatory region 603864	268 bp proximal
Rr603865	regulatory region 603865	1756 bp proximal
Tssr1364	transcription start site region 1364	1786 bp downstream
Tssr44360	transcription start site region 44360	1644 bp downstream
Tssr44361	transcription start site region 44361	1748 bp downstream
Tssr44362	transcription start site region 44362	1805 bp downstream