rs250538435 SNP Detail

Summary

• ID
  rs250538435
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:90997577 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    TGCAAATGC TGGGAGGCAC GGGAGGGAGG
  GGCTTGGAGA TGCCTGCTGT GGCCTTATCT CCCATCTCTG TAGAGTCAGC AGCTTCCTAG
  GAGTCACATT AAACAAAGAG TGGTCACCCG ATGTCCAGTG GAGACTTACC CATAGTTTCA
  K
  TTCAGTGGAG CAGACCAAAC CTGTCAGATT CCTAGCCTAT GAAATATATG GGAAAAGCTA
  CTGTACTCTT GATTGCTGGA CTTACAGACT ATATAAGTAG TTAATAGTGA CACCTTAACG
  GAAGTCCAAT GACCTTCTTC CAGGTCATAT                                 
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320391910	CHEV_2_91007389	CHEVERUD	SCREENING_POP	f	SNP	T	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs250538435					SNP	T	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:90997577 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Madd	MAP-kinase activating death domain			Intron
				Noncoding-Transcript-Variant
Rr560659	regulatory region 560659			1881 bp distal
Tssr25159	transcription start site region 25159			1392 bp downstream