rs250521888 SNP Detail

Summary

• ID
  rs250521888
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:148717749 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TACCTCTTAA AGAGCTGCCA
  GATTCCCATT CCCTGCTGAG CCTCCCCTCC CCCATCCCTG CCCCGCCTCT CCCTTCCTTC
  TTCACTCTTA GCTTTCTGTT CTTACCAGTT CCTCTTCTGT GCCCTTTTCC ACAGCTTCCC
  CTTTTACTCC AAGTTCCCTG TTTCATGAAG TGTGGTTTCA CCAGAGAAGT TGGTCATTGC
  W
  CTCTGGACCC TAAAATGCCA GTGACATCTG AACCCTGTTT CTCCAGAAAG GAAAAGGGCA
  ACGAGTCTTT AATTTCCTGC ATCTTCAAAG TTCAGCCTCG ATCACTTGAT GGAGAGCAGG
  GTCACTATGT GGGAATGCTC GGAGCAGGGC TATTATTTCA TTTTCCTGAA GGCCCTGTCC
  TAAGATACTT GTCAAAGGAA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss356083086	MGP_WTSI_2_148701565	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	A	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs250521888					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	A	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss356083086	MGP_WTSI_2_148701565	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:148717749 () rs orientation: forward

Symbol	Name	Function Class
Cst3	cystatin C	317 bp upstream
Rr374041	regulatory region 374041	within coordinates
Rr566976	regulatory region 566976	276 bp distal
Rr566977	regulatory region 566977	within coordinates
Rr566978	regulatory region 566978	1250 bp proximal
Tssr20682	transcription start site region 20682	658 bp downstream
Tssr20683	transcription start site region 20683	573 bp downstream
Tssr26688	transcription start site region 26688	385 bp upstream
Tssr26689	transcription start site region 26689	341 bp upstream
Tssr26690	transcription start site region 26690	213 bp upstream
Tssr26691	transcription start site region 26691	188 bp upstream