rs250518398 SNP Detail

Summary

• ID
  rs250518398
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:14937869 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGCTTCACTA TGGCAGTGTC
  ATTCGTGTTA GTGATTATGC TTAGTTATAA CTCAGCCCTC CATCACTGCC CTCTCCAGGT
  GACAGCTTCC CACAAAGTCC CCTCCTCTGC TTTAATAGGA ATTCCATTGG CCTTCTTCTT
  TAAGATCTCT TTCTCCCCTT CATGATCCCT TTTCTAGTTT CACGACTACA CACATATGTC
  W
  ACACACATAT AATTTTAATT CTGATTTATA TGAATGAAAG GAGATATTCA GTATTTATCT
  TTCTGAGGGC AAGGCAATCG GTAAGGGAGT CAGACCAAGC TGCCAACCTG GGCAGTGGGT
  GTTGGCCCAT CTCATCATGT GAGTGCTCCC AAAGCATTAA GTCAAAGTTG ACGAGGACTC
  TGGGATCCAG GCCAGTGCTA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss357060587	MGP_WTSI_3_14872809	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	A	T	T	T	T	T	T	T	A	T	T	T	T	T	T	T	T	T	T	T	T	A	T	T	T	T	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs250518398					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	A	T	T	T	T	T	T	T	A	T	T	T	T	T	T	T	T	T	T	T	T	A	T	T	T	T	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss357060587	MGP_WTSI_3_14872809	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:14937869 () rs orientation: forward

Symbol	Name	Function Class
Car3	carbonic anhydrase 3	428 bp downstream
Rr397608	regulatory region 397608	1593 bp upstream
Rr573713	regulatory region 573713	1040 bp distal
Rr573714	regulatory region 573714	1660 bp proximal
Rr573715	regulatory region 573715	1756 bp proximal
Tssr28448	transcription start site region 28448	1263 bp downstream
Tssr28449	transcription start site region 28449	1199 bp downstream
Tssr28450	transcription start site region 28450	1156 bp downstream
Tssr28451	transcription start site region 28451	1139 bp downstream
Tssr28452	transcription start site region 28452	1117 bp downstream
Tssr28453	transcription start site region 28453	1104 bp downstream
Tssr28454	transcription start site region 28454	1092 bp downstream
Tssr28455	transcription start site region 28455	1074 bp downstream
Tssr28456	transcription start site region 28456	1037 bp downstream
Tssr28457	transcription start site region 28457	975 bp downstream
Tssr28458	transcription start site region 28458	778 bp downstream
Tssr28459	transcription start site region 28459	741 bp downstream
Tssr28460	transcription start site region 28460	655 bp downstream
Tssr28461	transcription start site region 28461	599 bp downstream
Tssr28462	transcription start site region 28462	562 bp downstream
Tssr28463	transcription start site region 28463	511 bp downstream
Tssr28464	transcription start site region 28464	470 bp downstream
Tssr28465	transcription start site region 28465	331 bp downstream
Tssr32653	transcription start site region 32653	1005 bp upstream
Tssr32654	transcription start site region 32654	272 bp upstream