rs250513360 SNP Detail

Summary

• ID
  rs250513360
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:102027640 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGTCCCTGT CTTCCAGTCC
  GAAAACCAAA AGGAAGGGCT AACTAATGAT TCCAATGCAA TGTAAAGTCA AAGAACACTT
  GCCCCGATTG GTTGAGGTTT AGAATTGATA GCAAGATAGT GATAATGATC ATACCTTAAG
  TGCTTATTAC GGGCAAGGAC CAATCCTATC CTCTCAAAGG CCCATAACGG GGGGGGGGGG
  K
  GGGGGGGTGG TGGGGGGGCA GTATTCTCAG TGTGTAGAGG GAATAATCAA AGTAGGGAGT
  GACAGATGCA TTCAACTGAA GTCACATAGT CAGCGACTGG TAAGACTGGA TGTACCTGAG
  TCCTGACTGA CATGAAAGAC TATTCTGGAT AGCTGTGCTC AGAGACGGAA GCTTCAGGTA
  GCGTGTGTGT GTGTGTGTGT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320854482	CHEV_3_101924247	CHEVERUD	SCREENING_POP	f	SNP	G	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs250513360					SNP	G	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:102027640 () rs orientation: forward

Symbol	Name	Function Class
Casq2	calsequestrin 2	Intron
Rr582181	regulatory region 582181	753 bp proximal
Rr582182	regulatory region 582182	758 bp proximal
Rr582183	regulatory region 582183	1837 bp proximal
Rr582184	regulatory region 582184	1855 bp proximal
Rr582185	regulatory region 582185	1920 bp proximal