rs250490275 SNP Detail

Summary

• ID
  rs250490275
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr10:127503379 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATCCCTTCGG TATCTTAACA
  CCGTTCTCTG GCCTAAAGGT TGTAATATGA AGAGGCGGCT CTCAAACCTT GGTCGTAAGT
  TATACTAGAA TCTACTATTT ACTTGAGCGT TGGTTAGGCA CGTCGGGGTT GCTAGGTAGA
  GCCCGGATGG GTTTACCATG TTTTCGTGGC ACCCTCTTTT CTGATGGCCA GGCCTTACTG
  M
  TTGGACGACT AGATAGCAAA GCCAGGAAAA GGCAGGTACC TTCTCTGAGG TCATGAGTTA
  TTGAACCTCT CTGGACAGTG AAGTGGAAGC TGAGCAAAAG GCTAAGAGTA GTCTACGTGA
  CTGTCCACCG TGGAGGACCG CCTTCAAGGA GCCCAACCCC CTCGGTTTCT TCTAGTCCCA
  TCTGGTTCCC ATTACACGCC                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss382189893	MGP_WTSI_10_127104566	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs250490275					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss382189893	MGP_WTSI_10_127104566	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:127503379 () rs orientation: forward

Symbol	Name	Function Class
1700012D01Rik	RIKEN cDNA 1700012D01 gene	within coordinates
Nab2	Ngfi-A binding protein 2	Intron
Rr369095	regulatory region 369095	within coordinates
Rr440991	regulatory region 440991	889 bp distal
Rr440992	regulatory region 440992	356 bp distal
Tssr96239	transcription start site region 96239	368 bp downstream
Tssr96240	transcription start site region 96240	336 bp downstream
Tssr96241	transcription start site region 96241	881 bp upstream
Tssr99813	transcription start site region 99813	887 bp upstream
Tssr99814	transcription start site region 99814	764 bp upstream
Tssr99815	transcription start site region 99815	693 bp upstream
Tssr99816	transcription start site region 99816	573 bp upstream
Tssr99817	transcription start site region 99817	73 bp downstream
Tssr99818	transcription start site region 99818	139 bp downstream
Tssr99819	transcription start site region 99819	1011 bp downstream
Tssr99820	transcription start site region 99820	1362 bp downstream