rs250480216 SNP Detail

Summary

• ID
  rs250480216
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:54477707 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTGGCTGCTC TGTACATGTA
  TGGTCTTTGA AATTACACAT CTATTCTCTT TAGCCTTCCT CTTGCGATGA TGGACAGTAA
  CCAAAAGCAG TGTGGGGAGA AAAGAGTCCA TTTGACTTCC ATTTTCAGGT AACGGGTTGT
  CACTGACAGA AGTCAGGGTG GGAACTCAAG AAGAAGCAGT CAGGACCTTA GAGAAAGCAG
  K
  TTTTTTACTG GCTTTCTCCT CGGCTTCTCT AAGCTTGCTT TCTTGTACAG CCCAGACCAC
  TTATCCAGGC AGGTGTAGCT ACTCCCACAG TGGGATGTAC CCTTTAATAT TAATTAGAAA
  TCTAGAAAAT GCCCTTTAGA CAAACCCATA GGCCAATCCG ATCCAGGTAA CCTCAGCTAA
  GGTTCCCTCT TCCGGGACGA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320771952	CHEV_3_54374208	CHEVERUD	SCREENING_POP	f	SNP	G	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs250480216					SNP	G	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:54477707 () rs orientation: forward

Symbol	Name	Function Class
Gm65161	predicted gene, 65161	435 bp upstream
Rr576808	regulatory region 576808	1892 bp distal
Rr576809	regulatory region 576809	395 bp proximal
Tssr29130	transcription start site region 29130	369 bp downstream