rs250470988 SNP Detail

Summary

• ID
  rs250470988
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:75463120 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGTCACTTCT TGTAATGAAC
  ATGGTACAAT TTCTCCAAGA TTCTGCACTT AATTTTCACT TAATGAAAGC ATGAATATCT
  GTAAAGTAAG TTCTGTGAAA GTTTCACCCA TAGTTTTTGA AAATGGTAAG AAAATAGAAA
  TGAAAAGGAC TATTCTCTTA ATGGCAACAC TGAGCTATTC CTAAATATTA TCTATCCTTT
  W
  AAAATGGCGT GTGGAAAGTG AGTGTTATCA TTCAGTAGAC CCCAGAAAAA GGGGTAAAGA
  TCTAAGCTAA AGCGATCCTT CCTGTTTTAC AGAACATTAG AGAGGATGCT TTGGCAAAGC
  TTCCACTCCA CGTCAACAAA CCAACTCTCT GCACCTCACA ACCGTTTCTG ACAAACAGGC
  ACACTACTTT GCAACTTCTT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss358480656	MGP_WTSI_3_75359735	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	T	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs250470988					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	T	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss358480656	MGP_WTSI_3_75359735	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:75463120 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13269	CpG island 13269	511 bp proximal
Pdcd10	programmed cell death 10	Intron
Rr578348	regulatory region 578348	33 bp proximal
Rr578349	regulatory region 578349	988 bp proximal
Rr578350	regulatory region 578350	1024 bp proximal
Rr578351	regulatory region 578351	1745 bp proximal
Serpini1	serine (or cysteine) peptidase inhibitor, clade I, member 1	1680 bp upstream
Tssr29563	transcription start site region 29563	1697 bp upstream
Tssr29564	transcription start site region 29564	1717 bp upstream
Tssr29565	transcription start site region 29565	1763 bp upstream
Tssr29566	transcription start site region 29566	1781 bp upstream
Tssr33586	transcription start site region 33586	976 bp downstream
Tssr33587	transcription start site region 33587	1090 bp downstream
Tssr33588	transcription start site region 33588	1111 bp downstream