rs250456505 SNP Detail

Summary

• ID
  rs250456505
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr9:95288242 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGCCCCGGCC GCCCCTACCG
  CGGCACCCAG AGGCCCGTCG GGGTTGCACT GCTGCAGCGG CTCTTTATGC CACTTGTAGT
  CCAAGAGGTT GAGCATCGTG AGCACCAGTA GCAGTGCATA GCCCGCGCAC AGCACCAGCG
  CCTTCCTGCG AAATACCTTC ATCCCGAGCG GGGACGCAGG CCAGCGGCGT CCTGCGCGCC
  S
  GGGCCACGGC GGGAGCAGGG CCCGCTGCAC GGCGGCAGGC GCGGCCGGCA GCGGCCGGGG
  AAGCGCACCG GGGGGCAGAG CTCGCGGCGA GCTGCGGCTC ATCACAGGCA CAGCCGGGGC
  CGGCGGCGCG GCGGAGGCGG CCCTGCAGCC CAGGAGGGGG ACGCTGCAGG CCGGCTGCGG
  GCGCCGGGAC TGGGGCCGCC                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
ss378551928	MGP_WTSI_9_95306608	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	C	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
rs250456505					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	C	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss378551928	MGP_WTSI_9_95306608	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:95288242 () rs orientation: forward

Symbol	Name	Function Class
Chst2	carbohydrate sulfotransferase 2	Coding-NonSynonymous
Gm35915	predicted gene, 35915	1272 bp upstream
Gm37805	predicted gene, 37805	1215 bp upstream
Rr684785	regulatory region 684785	605 bp distal
Rr684786	regulatory region 684786	401 bp distal
Rr684787	regulatory region 684787	227 bp distal
Rr684788	regulatory region 684788	204 bp distal
Rr684789	regulatory region 684789	45 bp distal
Rr684790	regulatory region 684790	523 bp proximal
Rr684791	regulatory region 684791	1177 bp proximal
Tssr86547	transcription start site region 86547	1236 bp upstream
Tssr90901	transcription start site region 90901	1648 bp upstream
Tssr90902	transcription start site region 90902	1628 bp upstream
Tssr90903	transcription start site region 90903	1441 bp upstream
Tssr90904	transcription start site region 90904	919 bp downstream
Tssr90905	transcription start site region 90905	995 bp downstream
Tssr90906	transcription start site region 90906	1012 bp downstream
Tssr90907	transcription start site region 90907	1038 bp downstream
Tssr90908	transcription start site region 90908	1051 bp downstream
Tssr90909	transcription start site region 90909	1092 bp downstream
Tssr90910	transcription start site region 90910	1114 bp downstream
Tssr90911	transcription start site region 90911	1161 bp downstream
Tssr90912	transcription start site region 90912	1578 bp downstream