rs250409752 SNP Detail

Summary

• ID
  rs250409752
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:144113702 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTACAATTTT CATGAATCTT
  ACTTGGGAAT GATTTTCTCT TTTTTTTTGG AAACGTCAAA AGTTTAGTGT ATGCACTTTT
  AATGTTCTTG TGGGTTTTTT TGTTTTTGTT TTTTGGTTTT TTGAGTCAGG GTTTCTCTGT
  GTAGCCCTGG CTGTCCTGGA ACTCACTTTG TAGACCAGGC TGGCCTCTAA CTCAGAAATC
  Y
  ACCTGCCTCT GCCTCCCAAG TGCTGGGATC AAAGGCGTGC GCCACCACAC CCGGCTCTTG
  TGTGATTTTC AATTTGATGG TTTTAATATA GAAAATGTCT TAAACCTAAC ACCACTTTTT
  TTTTTTTTTC AGATACGAAC AGAACACACT TTTAAACTTT CCAGACTAGA GAAAAGTTAG
  AGGGGCGAAG TCTAAAAATG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss355978248	MGP_WTSI_2_144097518	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	C	C	C	C	C	T	C	C	C	C	C	C	C	C	T	C	C	T	T	T	T	C	C	T	T	C	C	T	C	C	C	C	T	T	C	T	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs250409752					SNP	T	T	C	C	C	C	C	T	C	C	C	C	C	C	C	C	T	C	C	T	T	T	T	C	C	T	T	C	C	T	C	C	C	C	T	T	C	T	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss355978248	MGP_WTSI_2_144097518	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:144113702 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12351	CpG island 12351	417 bp distal
Mgme1	mitochondrial genome maintenance exonuclease 1	Intron
Rr397362	regulatory region 397362	730 bp downstream
Rr397363	regulatory region 397363	65 bp downstream
Rr566425	regulatory region 566425	1221 bp distal
Rr566426	regulatory region 566426	831 bp distal
Rr566427	regulatory region 566427	134 bp distal
Snx5	sorting nexin 5	989 bp upstream
Tssr20524	transcription start site region 20524	1191 bp downstream
Tssr20525	transcription start site region 20525	1110 bp downstream
Tssr20526	transcription start site region 20526	833 bp downstream
Tssr20527	transcription start site region 20527	727 bp downstream
Tssr20528	transcription start site region 20528	149 bp downstream
Tssr26594	transcription start site region 26594	1714 bp upstream
Tssr26595	transcription start site region 26595	1296 bp upstream
Tssr26596	transcription start site region 26596	1249 bp upstream
Tssr26597	transcription start site region 26597	982 bp upstream
Tssr26598	transcription start site region 26598	935 bp upstream
Tssr26599	transcription start site region 26599	919 bp upstream