rs250391653 SNP Detail

Summary

• ID
  rs250391653
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:37842913 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATGTAGCTAT TTTCATAGAC
  TAAGTGGCAA GCTCTCAGAA TAATCATGTC TGTGAGGTGT TTCTGGGACA TTTCCACTTC
  CAGCTTCACG TTAATTGCAG AGGCTGAGGA TGCTGTGAAT GTCGAACTCC TCGGCCGGGC
  TCCGGAGATG TGGAGCATAC GGTGTGGTGG GTGCAGGAAG GGTTTCTCCG GCCCTTTCCT
  Y
  CCAGCGTTTA ATTTCCTCTT CTACCACCTG AGAGGCATTA CAACACACTG GATCTCCCGT
  ATCCAGCACA GTTTTAAAAT ACACATGGAG GTCTGGGGTT AGTTCAGTTG TTGAAGTGTT
  TTCAGTGTAA GTCTGAGGAC CGGATGATCT CGAACCCACT TTAAAAAAGC CACACGTGGT
  GGTCCTTCCT GCCTATAACC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320712819	CHEV_3_37687686	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs250391653					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:37842913 () rs orientation: forward

Symbol	Name	Function Class
Rr575564	regulatory region 575564	1643 bp distal
Rr575565	regulatory region 575565	23 bp distal
Rr575566	regulatory region 575566	558 bp proximal