rs250355214 SNP Detail

Summary

• ID
  rs250355214
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:192377045 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    TCCTAAGAC CCTCCTATAA CAGTGAGGTC
  AGCACTGACA TCTGCCACCA GTGCCTTGTG CTTGTCCTTT AGAAGACAGC TGGTCAGCTG
  CACCAAAAAT TCTGTAGTAT CTTCTGTGCA ACAGGAGATA TTCTATATGC CACATGAACA
  Y
  GCTGTCGCGG TCTCGCTGGG GCTTCCAGCC ATATTAGCTT TTAAAGCAGA TGGACAGTCT
  GAAGTGATCT TCCAGGAAGC TCAAGGAAGG TGAAAACAGC ACCCCAAGTC TTTTCTGGGG
  TTGTGTGTTG TTCCCATGGA GGATCCATGG                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320199533	CHEV_1_194520931	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs250355214					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:192377045 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Hhat	hedgehog acyltransferase			Intron
				Noncoding-Transcript-Variant
Rr426377	regulatory region 426377			1584 bp proximal