rs250355050 SNP Detail

Summary

• ID
  rs250355050
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:102378614 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTCTGCCATT CTTACTAGCC
  CTGGCCTCCA GTGAAAAACC ATATCTCACT GAGTACAGAA AGTAGAGGCC TGTGTCATGG
  TTCCTGTCTT TCCAAACTTT CCTGAGAGCT GGTGTTCAAC CTTCCTCAAA TTGTCTATAT
  CATCTTGTCC CTTCCAATTC CATGGTTTTC TCTCTGCTTC AGGCCTTCAT GAGTAGTCTA
  R
  GGAGATAGTC TTCTTGGGAT TTTACTTTTC GAAATCATCA AAGCACCCCA AAACCTAGAG
  GATAAAATTT AGAAACCCTG TCACACTCAC ATTATGTTCT TGCTCATTGC CAAACTCCAC
  ACAATTCTCT TCAATGGGTT CTCTCCCACT CTTTCTTTCA ATTACTTACC ATCACTCAAT
  TTGTATATGT GCATCCATCT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320438716	CHEV_2_102388426	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs250355050					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:102378614 () rs orientation: forward

Symbol	Name	Function Class
Cpgi11977	CpG island 11977	1497 bp proximal
Pamr1	peptidase domain containing associated with muscle regeneration 1	1743 bp upstream
Rr561703	regulatory region 561703	1362 bp proximal
Tssr19094	transcription start site region 19094	1776 bp upstream
Tssr19095	transcription start site region 19095	1830 bp upstream
Tssr19096	transcription start site region 19096	1848 bp upstream
Tssr19097	transcription start site region 19097	1869 bp upstream