rs250340841 SNP Detail

Summary

• ID
  rs250340841
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:137573017 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTATCCTAAG GTGGGACACA
  AGTACAGAGA CCCTCAGGGT ACAACGAAAG TACCTCCACC GAATGAACTT CGGATATAAT
  TTGCTTTTAG TGACCAGACA CAGGTGTGAA ATGCTAGTCA CATCTTGATT CATGCCAAGC
  ATGTTCCATT ATTATACATT GACCCCTTTC CCCTCCCTGA GCCTTAAGAC ATGTATCCTA
  R
  TTCCTGGAGC AAATCAAACA GAATAGGAGG TGCTTAAGCA GCCTATGTGG ATGAAAGAAC
  TTCCTGCCTT ACAGCTGCTT TAACCCAAAG AGCTGCATTG TACCTGCCAG GTGGCAGGTG
  GGTCAGATGT GCCGCTGAGA AGGGCTGGGG AACTGCGGGG GTTGGGGGTT CCAGGGCTTC
  CGATCCAAAG CAGGAAGCGC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss359894942	MGP_WTSI_3_137530220	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs250340841					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss359894942	MGP_WTSI_3_137530220	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:137573017 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13866	CpG island 13866	1428 bp distal
Cpgi13867	CpG island 13867	95 bp proximal
Dnajb14	DnaJ heat shock protein family (Hsp40) member B14	mRNA-UTR
H2az1	H2A.Z variant histone 1	334 bp downstream
Rr398061	regulatory region 398061	1251 bp downstream
Rr586004	regulatory region 586004	1484 bp distal
Rr586005	regulatory region 586005	886 bp distal
Rr586006	regulatory region 586006	within coordinates
Rr586007	regulatory region 586007	499 bp proximal
Tssr31916	transcription start site region 31916	1385 bp downstream
Tssr31917	transcription start site region 31917	1318 bp downstream
Tssr31918	transcription start site region 31918	502 bp upstream
Tssr31919	transcription start site region 31919	551 bp upstream
Tssr31920	transcription start site region 31920	603 bp upstream
Tssr31921	transcription start site region 31921	622 bp upstream
Tssr31922	transcription start site region 31922	702 bp upstream
Tssr31923	transcription start site region 31923	806 bp upstream
Tssr31924	transcription start site region 31924	821 bp upstream
Tssr31925	transcription start site region 31925	865 bp upstream