rs250296476 SNP Detail

Summary

• ID
  rs250296476
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:119457180 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGCGCCGGG CGAACCCGTC
  GCTGTTCCCC AGCCTGCAGG CCCGGGGCAT CCGCCGCGTG CAGATCCTCA GCCTCCGCCG
  CAGCCTCAGC TACGTGATCC AGGGCATGGC GAACATCGAG AGCCTCAACC TCAGCGGCTG
  CTACAACCTC ACCGACAACG GCCTGGGCCA CGCGTTCGTG CAGGAGATCG GCTCGCTGCG
  Y
  GCTCTCAACT TGAGCCTTTG CAAGCAGATC ACCGACAGCA GCCTGGGCCG CATAGCCCAG
  TACCTCAAGG GCCTGGAGGT GCTGGAGCTG GGGGGCTGCA GCAACATCAC CAACACCGGC
  CTTCTGCTCA TTGCCTGGGG GCTGCAGCGC CTCAAGAGCC TTAATCTCCG CAGCTGTCGC
  CACCTCTCGG ATGTGGGCAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss369847831	MGP_WTSI_6_119430237	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs250296476					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss369847831	MGP_WTSI_6_119430237	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:119457180 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17911	CpG island 17911	within coordinates
Fbxl14	F-box and leucine-rich repeat protein 14	Coding-Synonymous
Rr637690	regulatory region 637690	1981 bp distal
Rr637691	regulatory region 637691	541 bp distal
Rr637692	regulatory region 637692	174 bp proximal
Rr637693	regulatory region 637693	1631 bp proximal
Tssr58502	transcription start site region 58502	717 bp downstream
Tssr58503	transcription start site region 58503	689 bp downstream
Tssr58504	transcription start site region 58504	672 bp downstream
Tssr58505	transcription start site region 58505	424 bp downstream
Tssr58506	transcription start site region 58506	1163 bp upstream
Tssr58507	transcription start site region 58507	1241 bp upstream
Tssr58508	transcription start site region 58508	1301 bp upstream
Tssr58509	transcription start site region 58509	1326 bp upstream
Tssr58510	transcription start site region 58510	1719 bp upstream
Tssr62722	transcription start site region 62722	240 bp downstream
Tssr62723	transcription start site region 62723	1338 bp downstream
Wnt5b	wingless-type MMTV integration site family, member 5B	Intron